Blar i forfatter "Raknes, Inge Alexander"

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    • META-pipe cloud setup and execution 

      Agafonov, Aleksander; Mattila, Kimmo; Tuan, Cuong Duong; Tiede, Lars; Raknes, Inge Alexander; Bongo, Lars Ailo Aslaksen (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-01-18)
      META-pipe is a complete service for the analysis of marine metagenomic data. It provides assembly of high-throughput sequence data, functional annotation of predicted genes, and taxonomic profiling. The functional annotation is computationally demanding and is therefore currently run on a high-performance computing cluster in Norway. However, additional compute resources are necessary to open the ...

    • Mr. Clean: A Tool for Tracking and Comparing the Lineage of Scientific Visualization Code 

      Tartari, Giacomo; Tiede, Lars; Holsbø, Einar; Knudsen, Kenneth; Raknes, Inge Alexander; Fjukstad, Bjørn; Mode, Nicolle; Bjørndalen, John Markus; Lund, Eiliv; Bongo, Lars Ailo (Conference object; Konferansebidrag, 2014)

    • Norwegian e-Infrastructure for Life Sciences (NeLS) 

      Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-06-29)
      The Norwegian e-Infrastructure for Life Sciences (NeLS) has been developed by ELIXIR Norway to provide its users with a system enabling data storage, sharing, and analysis in a project-oriented fashion. The system is available through easy-to-use web interfaces, including the Galaxy workbench for data analysis and workflow execution. Users confident with a command-line interface and programming may ...

    • nsroot: Minimalist process isolation tool implemented with Linux namespaces 

      Raknes, Inge Alexander; Fjukstad, Bjørn; Bongo, Lars Ailo Aslaksen (Journal article; Tidsskriftartikkel, 2017-11-26)
      Data analyses in the life sciences are moving from tools run on a personal computer to services run on large computing platforms. This creates a need to package tools and dependencies for easy installation, configuration and deployment on distributed platforms. In addition, for secure execution there is a need for process isolation on a shared platform. Existing virtual machine and container ...

    • Spark-SPELL: Low-latency query-based search for gene expression compendia on cluster computers 

      Raknes, Inge Alexander (Master thesis; Mastergradsoppgave, 2014-06-01)
      Exploratory analyses are vital to fully realize the potential for scientific discoveries in large-scale biomedical data compendia. Specifically, most biomedical data analyses require a human expert to interactively explore the data to find novel hypotheses or conclusions. However, recent developments in biotechnology instruments are generating Tera-scale datasets. No interactive biomedical data ...